ReadName Flag Chrom Position MapQ CIGAR ...
read1 16 chr1 10000 30 101M ... read2 4 * 0 255 * ...
Options: | Suppl. alignment | PCR duplicate | Fail QC | Secondary alignment | Read 2 | Read 1 | Mate rev. comp. | Rev. comp. | Mate unmapped | Read unmapped | Proper pair | Paired-end | |||
Binary: | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | |||
SAM Flag (decimal): |